PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.007G113300.5
Common NameB456_007G113300, LOC105802851
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 335aa    MW: 37680.7 Da    PI: 7.3605
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.007G113300.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.94.1e-14148199155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Gorai.007G113300.5 148 QRMTHIAVERNRRRQMNDYLNSLRSLMPPC---YIQRGDQASIIAGAIDFVKELE 199
                         79****************************...*******************995 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.13E-12146203No hitNo description
SuperFamilySSF474595.76E-17147213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.126147198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.4E-15148210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-11148199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-11153204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MPFLQMLQSV ESPQLFAFKE PNFQTLLRLQ HMKKPWELNT NPFIPEMETQ VQALELESCV  60
THETVLDLHS PVKSETKELK KSPPSSSCAE VLSSGSNQHQ PKSDNCSGEP NLGSSPQKIF  120
TKSPPITRER RKRKRTKAAK NKEEVESQRM THIAVERNRR RQMNDYLNSL RSLMPPCYIQ  180
RGDQASIIAG AIDFVKELEQ LLQSLEAQKR TGKVHESNNS MSNPAMEIHQ QEYENGSEDG  240
HCGEEVKAES KTGAAEVEVN VIHNHVNLKI QCSRRAGQLI QAIVTLETLR LTVLHLNITT  300
SRASVLYSFN LKMEDDSALR SADEIAAAVH QIFS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1129134RRKRKR
2148159RMTHIAVERNRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012490191.10.0PREDICTED: transcription factor bHLH67-like isoform X3
TrEMBLA0A0D2SI450.0A0A0D2SI45_G
STRINGVIT_15s0048g02510.t011e-123(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.12e-63bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]